plotthis for R plotting – Jie Hua’s Bioinformatics Notes

基本信息 / Basic Information

我注意到一个名为 “plotthis” 的新 R 包。该包可以用简单的命令生成达到发表水准的图表，大大简化了 R 的绘图流程。

I noticed a new R package called “plotthis” produced byundefined. This package could generate publication ready plots with simple commands, which largely simplified the R plotting process.

手册：https://jbengler.github.io/tidyplots/

The manual: https://jbengler.github.io/tidyplots/

它基于 ggplot2 体系，同时也很容易按需添加更多功能。

It is based on ggplot2 system, it is also very easy to add more features as we want.

安装 / Installation

Code

pak::pkg_install("plotthis")

开发版本可以通过以下方式安装

The development version could be installed with

Code

pak::pkg_install("pwwang/plotthis")

绘图演示 / Plotting Demo

Code

library(plotthis)

聚类树图 / Clustree Plot

First 6 rows of the demo dataframe
p.0.4	p.0.5	p.0.6	p.0.7	p.0.8	p.0.9	p.1	split
B	A	F	G	G	J	Z	2
D	E	A	H	A	D	I	1
C	F	G	G	C	H	NA	2
A	C	B	B	C	E	L	1
A	E	A	E	H	H	B	1
A	E	B	B	B	E	T	2

Code

ClustreePlot(data, prefix = "p") + theme_blog_overlay

我后来意识到，你可能需要仔细设置图的高度和宽度，因为这个包不会自动适配屏幕尺寸，这是一个小缺点。

I just realized that you might set the height and width of plots carefully, as this package dose not fit the size of your screen automatically, it is a small shortage.

我很喜欢它能够生成的弦图（ChordPlot）和韦恩图（VennDiagram）。

I like the ChordPlot and VennDiagrm it could generate.

这个包也许对初学者，或对 ggplot2 了解不多的人有所帮助。

This package maybe helpful for beginners or people without much knowledge of ggplot2.